| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update Nucleic Acids Research 50 (W1), W345-W351, 2022 | 491 | 2022 |
| A predator unmasked: life cycle of Bdellovibrio bacteriovorus from a genomic perspective S Rendulic, P Jagtap, A Rosinus, M Eppinger, C Baar, C Lanz, H Keller, ... Science 303 (5658), 689-692, 2004 | 477 | 2004 |
| Complete genome sequence and analysis of Wolinella succinogenes C Baar, M Eppinger, G Raddatz, J Simon, C Lanz, O Klimmek, ... Proceedings of the National Academy of Sciences 100 (20), 11690-11695, 2003 | 286 | 2003 |
| A two‐step database search method improves sensitivity in peptide sequence matches for metaproteomics and proteogenomics studies P Jagtap, J Goslinga, JA Kooren, T McGowan, MS Wroblewski, ... Proteomics 13 (8), 1352-1357, 2013 | 238 | 2013 |
| Community-driven data analysis training for biology B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ... Cell systems 6 (6), 752-758. e1, 2018 | 214 | 2018 |
| Multi-omic data analysis using Galaxy J Boekel, JM Chilton, IR Cooke, PL Horvatovich, PD Jagtap, L Käll, ... Nature biotechnology 33 (2), 137-139, 2015 | 169 | 2015 |
| The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update G Community Nucleic Acids Research, 2024 | 138* | 2024 |
| Temporal quantitative proteomics by iTRAQ 2D-LC-MS/MS and corresponding mRNA expression analysis identify post-transcriptional modulation of actin-cytoskeleton regulators … VG Keshamouni, P Jagtap, G Michailidis, JR Strahler, R Kuick, AK Reka, ... Journal of proteome research 8 (1), 35-47, 2009 | 119 | 2009 |
| Deep metaproteomic analysis of human salivary supernatant P Jagtap, T McGowan, S Bandhakavi, ZJ Tu, S Seymour, TJ Griffin, ... Proteomics 12 (7), 992-1001, 2012 | 110 | 2012 |
| Using Galaxy-P to leverage RNA-Seq for the discovery of novel protein variations GM Sheynkman, JE Johnson, PD Jagtap, MR Shortreed, G Onsongo, ... BMC genomics 15, 1-9, 2014 | 106 | 2014 |
| Flexible and accessible workflows for improved proteogenomic analysis using the Galaxy framework PD Jagtap, JE Johnson, G Onsongo, FW Sadler, K Murray, Y Wang, ... Journal of proteome research 13 (12), 5898-5908, 2014 | 100 | 2014 |
| Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows T Van Den Bossche, BJ Kunath, K Schallert, SS Schäpe, PE Abraham, ... Nature communications 12 (1), 7305, 2021 | 94 | 2021 |
| Relative quantification: characterization of bias, variability and fold changes in mass spectrometry data from iTRAQ-labeled peptides DW Mahoney, TM Therneau, CJ Heppelmann, LA Higgins, LM Benson, ... Journal of proteome research 10 (9), 4325-4333, 2011 | 92 | 2011 |
| Progress and challenges in ocean metaproteomics and proposed best practices for data sharing MA Saito, EM Bertrand, ME Duffy, DA Gaylord, NA Held, WJ Hervey IV, ... Journal of proteome research 18 (4), 1461-1476, 2019 | 91 | 2019 |
| Metaproteomic analysis using the Galaxy framework PD Jagtap, A Blakely, K Murray, S Stewart, J Kooren, JE Johnson, ... Proteomics 15 (20), 3553-3565, 2015 | 91 | 2015 |
| Galaxy Training: A powerful framework for teaching! S Hiltemann, H Rasche, S Gladman, HR Hotz, D Larivière, D Blankenberg, ... PLoS computational biology 19 (1), e1010752, 2023 | 78 | 2023 |
| Adaptation to low temperature and regulation of gene expression in Antarctic psychrotrophic bacteria MK Ray, GS Kumar, K Janiyani, K Kannan, P Jagtap, MK Basu, S Shivaji Journal of Biosciences 23, 423-435, 1998 | 78 | 1998 |
| The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes T Van Den Bossche, MØ Arntzen, D Becher, D Benndorf, VGH Eijsink, ... Microbiome 9 (1), 243, 2021 | 77 | 2021 |
| Protein relative abundance patterns associated with sucrose-induced dysbiosis are conserved across taxonomically diverse oral microcosm biofilm models of dental caries JD Rudney, PD Jagtap, CS Reilly, R Chen, TW Markowski, LA Higgins, ... Microbiome 3, 1-17, 2015 | 66 | 2015 |
| Gut microbial β-glucuronidases regulate host luminal proteases and are depleted in irritable bowel syndrome AL Edwinson, L Yang, S Peters, N Hanning, P Jeraldo, P Jagtap, ... Nature microbiology 7 (5), 680-694, 2022 | 61 | 2022 |
Subina MehtaUniversity of MinnesotaVerified email at umn.edu
Praveen KumarData Sciences & Quantitative Biology, Discovery Sciences, AstraZenecaVerified email at astrazeneca.com
Ray SajulgaUniversity of MinnesotaVerified email at umn.eduBjörn GrüningUniversity of FreiburgVerified email at informatik.uni-freiburg.de
Getiria OnsongoAssistant Professor of Computer Science, Macalester CollegeVerified email at macalester.edu
Stephan C. SchusterReseach Director and Chair in Genomics, SCELSE, Nanyang Technological University SingaporeVerified email at ntu.edu.sg
Folker MeyerUniversity of Duisburg-Essen; University Hospital EssenVerified email at uni-due.de
Sean L. Seymour, Ph.D.Seymour Data Science, LLCVerified email at seymourdatascience.com
Brook L. NunnProfessor Genome Sciences, University of WashingtonVerified email at uw.edu
Bart MesuereGhent UniversityVerified email at ugent.be
Lloyd M SmithProfessor of Chemistry, University of WisconsinVerified email at chem.wisc.edu
Ira CookeJames Cook UniversityVerified email at jcu.edu.au
Lukas KällProfessor, Science for Life Laboratory, KTH Royal Institute of TechnologyVerified email at kth.se
Vipin KumarUniversity of MinnesotaVerified email at umn.edu
Malay K RayChief Scientist, Centre for Cellular and Molecular BiologyVerified email at ccmb.res.in
Perry D MoerlandAssistant Professor, Bioinformatics Laboratory, Amsterdam UMC, University of AmsterdamVerified email at amsterdamumc.nl
